Dear list, I just wanted to check whether chemical structures typeset in ConTeXt can be exported as XML. Therefore I wanted to setup a simple example with ppchTeX. I copied example 3.1 from the manual [1]
\usemodule[chemic] \starttext
\startchemical[height=4500,bottom=2500] \bottext{$\beta$-D-Fructopyranose} \chemical[SIX,FRONT,BB1236,+SB4,-SB5,Z5][O] \chemical[SIX,FRONT,+R12346,+RZ12346][\SR{HO},H,H,H,OH] \chemical[SIX,FRONT,-R12346,-RZ12346][H,OH,\SR{HO},H,CH_2OH] \stopchemical
\stoptext
Unfortunately, typesetting with MkIV distributed with TL 2016 produces something really weird (see attached). Is the module `chemic` compatible with MkIV or am I doing something wrong? Cheers, Henri [1] http://www.pragma-ade.nl/general/manuals/mp-ch-en.pdf
On Wed, 6 Jul 2016 18:23:57 +0200
Henri Menke
Dear list,
I just wanted to check whether chemical structures typeset in ConTeXt can be exported as XML. Therefore I wanted to setup a simple example with ppchTeX. I copied example 3.1 from the manual [1]
\usemodule[chemic] \starttext
\startchemical[height=4500,bottom=2500] \bottext{$\beta$-D-Fructopyranose} \chemical[SIX,FRONT,BB1236,+SB4,-SB5,Z5][O] \chemical[SIX,FRONT,+R12346,+RZ12346][\SR{HO},H,H,H,OH] \chemical[SIX,FRONT,-R12346,-RZ12346][H,OH,\SR{HO},H,CH_2OH] \stopchemical
\stoptext
Unfortunately, typesetting with MkIV distributed with TL 2016 produces something really weird (see attached).
Is the module `chemic` compatible with MkIV or am I doing something wrong?
Cheers, Henri
\usemodule[chemic] is MKII. It has been replace with core MKIV commands. The syntax has been somewhat rationalized and many bugs corrected. The example can be reproduced as follows: \starttext \startchemical [height=4500,bottom=2500] \bottext{$\beta$-D-Fructopyranose} \chemical[SIXFRONT,BB123,B4,+SB5,-SB6,Z6] [O] \chemical[+LR12345,LRZ12345] [OH,\SR{HO},H,H,H] \chemical[+RR12345,RRZ12345] [CH_2OH,H,\SL{OH},\SR{HO},H] \stopchemical \stoptext Unfortunately, the revised manual still has some errors that I need to fix... Alan
Dear Alan, thanks a lot for fixed code. Could you point out where to find the updated manual for MkIV? Cheers, Henri On 07/07/2016 08:26 PM, Alan BRASLAU wrote:
On Wed, 6 Jul 2016 18:23:57 +0200 Henri Menke
wrote: Dear list,
I just wanted to check whether chemical structures typeset in ConTeXt can be exported as XML. Therefore I wanted to setup a simple example with ppchTeX. I copied example 3.1 from the manual [1]
\usemodule[chemic] \starttext
\startchemical[height=4500,bottom=2500] \bottext{$\beta$-D-Fructopyranose} \chemical[SIX,FRONT,BB1236,+SB4,-SB5,Z5][O] \chemical[SIX,FRONT,+R12346,+RZ12346][\SR{HO},H,H,H,OH] \chemical[SIX,FRONT,-R12346,-RZ12346][H,OH,\SR{HO},H,CH_2OH] \stopchemical
\stoptext
Unfortunately, typesetting with MkIV distributed with TL 2016 produces something really weird (see attached).
Is the module `chemic` compatible with MkIV or am I doing something wrong?
Cheers, Henri
\usemodule[chemic] is MKII. It has been replace with core MKIV commands.
The syntax has been somewhat rationalized and many bugs corrected.
The example can be reproduced as follows:
\starttext
\startchemical [height=4500,bottom=2500] \bottext{$\beta$-D-Fructopyranose} \chemical[SIXFRONT,BB123,B4,+SB5,-SB6,Z6] [O] \chemical[+LR12345,LRZ12345] [OH,\SR{HO},H,H,H] \chemical[+RR12345,RRZ12345] [CH_2OH,H,\SL{OH},\SR{HO},H] \stopchemical
\stoptext
Unfortunately, the revised manual still has some errors that I need to fix...
Alan
participants (2)
-
Alan BRASLAU
-
Henri Menke