Dear Mojca,

As you told me, I changed "outputdriver" in tex.rb from xdvipdfmx to xdv2pdf and run it.
There is no delay at all, but the output pdf lost color and mp stuffs.

I think that it is better to use xdvipdfmx even though it took more times. 

During the test, I found a strange result. Here is the last part of the log file.

%%%%%%%%%%%
systems         : no file 'cont-sys.tex', using 'cont-sys.rme' instead
) )
[7][8][9]  <---   at this point, TeXniscope redisplay the pdf file in which backgroundscreen or backgroundcolor is well applied

81117 bytes written
Output written on combimain.pdf (9 pages).
Transcript written on combimain.log.
TeXUtil | parsing file combimain.tui
TeXUtil | shortcuts : 169
TeXUtil | expansions: 308
TeXUtil | reductions: 0
TeXUtil | divisions : 0
TeXUtil | loaded files: 1
TeXUtil | temporary files: 0
TeXUtil | commands: 42
TeXUtil | programs: 0
TeXUtil | tuo file saved

At this point, it paused for long time 

** NOTICE: This document contains a `Preview & Print only' licensed font **
TeXExec | runtime: 144.462654

At this point, TeXniscope redisplay the output again and in which backgroundscreen and backgroundcolor didn't work.
%%%%%%%%%%%%%%%%

Do you have  experienced the similar thing?

Thank you.

Best regards,

Dalyoung